Table 2 Sequence variations in 76 mtDNAs of haplogroup F2. When the analyzed sequences were identical to the revised Cambridge reference sequence, items are indicated with CRS. When (a) nucleotide change(s) was detected compared to the CRS sequence, only the number of position is indicated for transition, the number with a suffix (i.e. A, C, G, and T) for transversion, with “d” for deletion and with “+” for insertion. When sequence information was not available, items leave blank

From: Phylogeographic analysis of mitochondrial DNA haplogroup F2 in China reveals T12338C in the initiation codon of the ND5 gene not to be pathogenic

Samplea

Location

Haplogroup

HVS-I (16000+)

HVS-II (30–407) (73, 263, and 315+C in addition)b

10171–10659 (10000+)c

Nucleotide at 12338

References

GD48

Guangdong

F2

CRS

235 249d

  

Kivisild et al. (2002)

GD7810

Zhanjiang, Guangdong

F2

261

194 235 249d 309+C

310 535 586

C

Yao et al. (2002a)

GD49

Guangdong

F2

209 304

249d 309+C

  

Kivisild et al. (2002)

Kaz28

Xinjiang

F2

304

   

Yao et al. (2000)

Miao10

Kaili, Guizhou

F2

304

195 249d

310 535 586

 

This study

Miao5

Kaili, Guizhou

F2

304

   

This study

SD10316

Tai’an, Shandong

F2

304

249d 309+C

310 535 586

C

Yao et al. (2003)

Tibet27

Qinghai

F2

304

 

310 535 586

C

This study

SD10301

Tai’an, Shandong

F2

304 519

249d

310 535 586

C

Yao et al. (2003)

QJ516

Qijiang, Chongqing

F2

304 327 362

249d

310 535 586

C

This study

Mg11

Qinghai

F2

217 221 304

 

310 535 586

 

Yao et al. (2002c)

WH6948

Wuhan, Hubei

F2

299 304

249d 309+C

310 535 586

C

Yao et al. (2002a)

She15

Fuquan, Guizhou

F2

051 304

195 249d 309+CC

310 535 586

 

This study

Man153

Inner Mongolia

F2a

187 221 291 304

42+T 195 249d 275 309+CC

310 535 586

 

This study

YN281

Kunming, Yunnan

F2a

051 291 304

195 249d

310 535 586

 

Yao et al. (2002a)

QD8147d

Qingdao, Shandong

F2a1

266 291 304

146 249d

310 535 586

C

Yao et al. (2002a)

SD10335

Tai’an, Shandong

F2a1

266G 291 304 519

249d 309+C

310 535 586

C

Yao et al. (2003)

SD10340

Tai’an, Shandong

F2a1

266G 291 304 519

249d 309+CC

310 535 586

C

Yao et al. (2003)

Tu58

Qinghai

F2a1

266G 291 304 325 519

249d 309+CC

310 535 586

C

This study

Naxi80

Lijiang, Yunnan

F2a1

185 266A 291 304 519

249d

310 535 586

C

This study

Naxi83

Lijiang, Yunnan

F2a1

185 266G 304 519

249d

  

This study

Naxi73

Lijiang, Yunnan

F2a1

185 266A 291 304 519

195 249d

  

This study

Bai21

Dali, Yunnan

F2a1

185 266A 291 304

   

Yao et al. (2002c)

Nu17

Gongshan, Yunnan

F2a1

185 258 266A 291 304

   

Yao et al. (2002c)

Nu22

Gongshan, Yunnan

F2a1

185 258 266A 291 304

   

Yao et al. (2002c)

Nu26

Gongshan, Yunnan

F2a1

185 258 266A 291 304

   

Yao et al. (2002c)

Nu30

Gongshan, Yunnan

F2a1

185 258 266A 291 304

   

Yao et al. (2002c)

Miao1

Kaili, Guizhou

F2a2

092A 291 304

   

This study

Miao32

Kaili, Guizhou

F2a2

092A 291 304

   

This study

Mulam13

Luocheng, Guangxi

F2a2

092A 291 304

   

This study

Mulam15

Luocheng, Guangxi

F2a2

092A 291 304

   

This study

GD50

Guangdong

F2a2

092A 291 304

249d

  

Kivisild et al. (2002)

SD10360

Tai’an, Shandong

F2a2

092A 291 304

249d

310 535 586

 

Yao et al. (2003)

XJ8414

Yili, Xinjiang

F2a2

092A 291 304

249d 309+CC

310 535 586

C

Yao et al. (2002a)

QJ534

Qijiang, Chongqing

F2a2

092A 291 299 304 362 519

249d 309+C

310 535 586

C

This study

SD10302

Tai’an, Shandong

F2a2

092A 289 291 304

249d 309+CC

310 535 586

C

Yao et al. (2003)

GD7836n

Zhanjiang, Guangdong

F2a2

092A 291 304 359

249d 309+C

310 535 586

 

Yao et al. (2002a)

Jing100

Guangxi

F2a2

092A 291 304 311

195 249d

 

C

This study

Jing126

Guangxi

F2a2

092A 291 304 311

195 249d

  

This study

Jing140

Guangxi

F2a2

092A 291 304 311

195 249d

  

This study

Jing73

Guangxi

F2a2

092A 291 304 311

195 249d

 

C

This study

Jing83

Guangxi

F2a2

092A 291 304 311

195 249d

  

This study

Lisu12

Gongshan, Yunnan

F2a2

092A 170C 189 291 294 304

   

Yao et al. (2002c)

Dai51

Xishuangbanna, Yunnan

F2a2

092A 170T 189 291 304

   

Yao et al. (2002c)

Lisu34

Gongshan, Yunnan

F2a2

092A 170T 189 291 304

   

Yao et al. (2002c)

Lisu45

Gongshan, Yunnan

F2a2

092A 170T 189 291 304

   

Yao et al. (2002c)

Lisu30

Gongshan, Yunnan

F2a2

092A 170T 183T 189 291 304 400

   

Yao et al. (2002c)

Nu14

Gongshan, Yunnan

F2a2

092A 170T 183T 189 291 304

   

Yao et al. (2002c)

XJ8407

Yili, Xinjiang

F2a3

203 239 291 304

249d 309+C

310 535 586

C

Yao et al. (2002a)

YND303

Kunming, Yunnan

F2a3

203 291 304 519

249d 309+C

310 535 586

C

This study

Tu40

Qinghai

F2a3

203 291 304 519

249d 309+C

  

This study

Hui38

Yili, Xinjiang

F2a3

093 203 291 304

 

310 535 586

C

This study

QH9477

Qinghai

F2a3

093 203 291 304

 

310 535 586

C

This study

Mg242

Inner Mongolia

F2a3

126 203 291 304

249d 309+C

310 535 586

C

Kong et al. (2003a)

QHD20

Qinghai

F2a3

126 203 291 304

   

This study

GD7842

Zhanjiang, Guangdong

F2b

129 189 304

207 249d

310 535 586

C

Yao et al. (2002a)

Mg46

Yili, Xinjiang

F2b

203 304

 

310 535 586

C

This study

Tibet34

Qinghai

F2b

203 304

 

310 535 586

C

This study

LN7601

Fengcheng, Liaoning

F2b

129 203 304

195 249d

310 535 586

C

Yao et al. (2002a)

YNC13

Kunming, Yunnan

F2b

093 203 304 519

249d

310 535 586

C

This study

GD7809d

Zhanjiang, Guangdong

F2b

086 203 304

249d

310 535 586

C

Yao et al. (2002a)

Lahu95

Yunnan

F2b

086 167 203 304 519

   

Yao and Zhang (2002)

Lahu63

Yunnan

F2b

086 167 203 304 318

   

Yao and Zhang (2002)

Lahu65

Yunnan

F2b

086 167 203 304 318

   

Yao and Zhang (2002)

Lahu74

Yunnan

F2b

086 167 203 304 318

   

Yao and Zhang (2002)

Lahu81

Yunnan

F2b

086 167 203 304 318

   

Yao and Zhang (2002)

Lahu82

Yunnan

F2b

086 167 203 304 318

   

Yao and Zhang (2002)

Lahu84

Yunnan

F2b

086 167 203 304 318

   

Yao and Zhang (2002)

Lahu87

Yunnan

F2b

086 167 203 304 318

   

Yao and Zhang (2002)

Lahu88

Yunnan

F2b

086 167 203 304 318

   

Yao and Zhang (2002)

Sani21

Nuxi, Yunnan

F2b

086 167 203 304 318 474+G

   

Yao et al. (2002c)

Li39

Hainan

F2c

304 527

249d 309+C

265 310 535 586

C

This study

Li50

Hainan

F2c

304 527

249d 309+C

265 310 535 586

C

This study

GD124

Meizhou, Guangdong

F2c

304 527

249d

265 310 325 535 586

C

This study

WH6974

Wuhan, Hubei

F2c

192 304

249d

265 310 535 586

C

Yao et al. (2002a)

YNC105

Kunming, Yunnan

F2c

086 304G

151 152 249d 309+C

265 310 535 586 598

C

This study

  1. aThe abbreviation for each sample is indicated in Table 1
  2. bAll the samples analyzed had 73, 263, and 315+C in addition to (a) change(s) indicated. For a example, GD48 had 73, 235, 249d, 263, and 315+C
  3. cFor the indicated samples, region 10171–10659 was sequenced in this study except for those reported by Yao et al. (2002a)
  4. dSamples QD8147 and GD7809 were completely sequenced by Kong et al. (2003b)
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