Table 4 Relevant nucleotide variations in major sub-clades of haplogroup F2. Only varied nucleotides are indicated with a letter while the identical nucleotide to rCRS is indicated with dots. When information for nucleotide sequences is not available, the items have been left blank

From: Phylogeographic analysis of mitochondrial DNA haplogroup F2 in China reveals T12338C in the initiation codon of the ND5 gene not to be pathogenic

Haplogroup

Representative sample

Nucleotide variations at the indicated position

1005

1709

1824

3290

4811

5417

5846

6392

7828

8636

9137

10310

10535

10586

10801

10810

12338

12609

12366

13500

13708

13928

14016

14560

H

rCRS

T

G

T

T

A

G

C

T

A

T

T

G

T

G

G

T

T

T

A

T

G

G

G

G

F2a1

QD8147

C

A

C

C

G

A

T

C

G

C

C

A

C

A

A

.

C

C

.

C

A

C

A

.

F2a1

Tu58

C

.

C

.

.

.

.

C

G

.

.

A

C

A

.

 

C

.

 

.

A

C

.

 

F2a1

Naxi80

C

.

C

.

.

.

.

C

G

.

.

A

C

A

.

 

C

.

 

.

A

C

.

 

F2a2

XJ8414

C

.

C

.

G

.

.

C

G

.

.

A

C

A

.

 

C

.

 

.

A

C

.

 

F2a3

XJ8407

C

.

C

.

.

.

.

C

G

.

.

A

C

A

.

 

C

.

 

.

A

C

.

 

F2b

GD7809

C

.

C

.

.

.

.

C

G

.

.

A

C

A

.

C

C

.

G

.

A

C

.

A

F2b

Mg46

C

 

C

     

G

  

A

C

A

 

C

C

 

.

 

A

C

 

A

F2b

LN7601

C

 

C

     

G

  

A

C

A

 

C

C

 

.

 

A

C

 

.

F2b

GD7842

C

 

C

     

G

  

A

C

A

 

C

C

 

.

 

A

C

 

.

F2a3

Mg242

C

 

C

     

G

  

A

C

A

 

.

C

 

.

 

A

C

 

.

F2a3

QH9477

C

 

C

     

G

  

A

C

A

 

.

C

 

.

 

A

C

 

.

F2a3

Hui38

C

 

C

     

G

  

A

C

A

 

.

C

 

.

 

A

C

 

.

F2c

WH6974

C

 

C

     

G

  

A

C

A

 

.

C

 

.

 

A

C

 

.

F2

WH6948

C

 

C

     

G

  

A

C

A

 

.

C

 

.

 

A

C

 

.

F2

GD7810

C

 

C

     

G

  

A

C

A

 

.

C

 

.

 

A

C

 

.

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