Extended Data Figure 2: mRNA structure analysis with different window sizes.
From: Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo
a, b, Scatter plots of Gini index versus r values in replicate samples and for in vivo or in vitro samples relative to denatured sample for mRNA regions with an average of at least 15 counts per position, spanning the sequence of 25 A/C nucleotides (5,000 randomly selected regions are shown) (a) or 100A/C nucleotides (b). Shown are regions spanning validated secondary structures (red dots) and regions from the 18S rRNA (green dots).
