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The “Minimum Information about an ENvironmental Sequence” (MIENS) specification
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  • Published: 16 November 2010

The “Minimum Information about an ENvironmental Sequence” (MIENS) specification

  • Peter Sterk1,
  • Jeffrey Gordon2,
  • Owen White3,
  • Anjanette Johnston4,
  • Sara Nakielny5,
  • George Weinstock6,
  • Mani Arumugam7,
  • Robert Guralnick8,
  • Josh Neufeld9,
  • Andreas Wilke10,
  • Guy Cochrane11,
  • Karen Nelson12,
  • Doug Wendel5,
  • Laura Baumgartner13,
  • Philip Hugenholtz14,
  • Wolfgang Hankeln15,
  • Norman Pace13,
  • Jennifer Wortmann3,
  • Diana Nemergut16,
  • Vivien Bonazzi17,
  • Bruce Birren2,
  • Janet Jansson18,
  • Sarah Highlander19,
  • Giriprakash Palanisamy20,
  • Frank Oliver Glöckner21,
  • Peer Bork7,
  • Martin Blaser22,
  • Jerry Kennedy5,
  • Jörg Peplies23,
  • Dan Knights24,
  • Jane Peterson17,
  • Joseph Petrosino19,
  • Pier Luigi Buttigieg15,
  • Patrick Chain25,
  • Omry Koren26,
  • Elizabeth Costello5,
  • Justin Kuczynski13,
  • Lita Proctor27,
  • Heather Huot-Creasy3,
  • Nikos Kyrpides14,
  • Jeroen Raes28,
  • Peter Dawyndt29,
  • David Relman30,
  • Robert Larsen5,
  • Sujeevan Ratnasingham31,
  • Pelin Yilmaz21,
  • Todd DeSantis32,
  • Ruth Ley26,
  • Susanna Assunta-Sansone33,
  • Christian Lauber34,
  • Jacques Ravel3,
  • Rachel Gallery35,
  • Renzo Kottmann21,
  • Noah Fierer8,
  • Catherine Lozupone5,
  • Lynn Schriml3,
  • Teresa Legg8,
  • Robert Vaughan11,
  • Richard Gibbs36,
  • Dawn Field37,
  • Jed Fuhrman38,
  • Wolfgang Ludwig39,
  • Erica Sodergren6,
  • Rob Knight40,
  • Michelle Gwinn Giglio3,
  • Donna Lyons34,
  • Aymé Spor26,
  • Christopher Hunter11,
  • Eamonn Maguire33,
  • James Cole41,
  • Jesse Stombaugh5,
  • Inigo San Gil42,
  • Joonhong Park43,
  • Linda Amaral-Zettler44,
  • James Tiedje45,
  • Barbara Methé12,
  • Jack Gilbert46,
  • Elizabeth Glass10,
  • Norman Morrison47,
  • Folker Meyer10,
  • Ilene Karsch-Mizrachi4,
  • Antonio Gonzalez24,
  • Phillipe Rocca-Serra48 &
  • …
  • Doyle Ward2 

Nature Precedings (2010)Cite this article

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Abstract

We present the Genomic Standards Consortium’s (GSC) “Minimum Information about an ENvironmental Sequence” (MIENS) standard for describing marker genes. Adoption of MIENS will enhance our ability to analyze natural genetic diversity across the Tree of Life as it is currently being documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.

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Author information

Authors and Affiliations

  1. NERC Centre for Ecology and Hydrology https://www.nature.com/nature

    Peter Sterk

  2. Broad Institute of Massachusetts Institute of Technology and Harvard University https://www.nature.com/nature

    Jeffrey Gordon, Bruce Birren & Doyle Ward

  3. Institute for Genome Sciences, University of Maryland School of Medicine https://www.nature.com/nature

    Owen White, Jennifer Wortmann, Heather Huot-Creasy, Jacques Ravel, Lynn Schriml & Michelle Gwinn Giglio

  4. National Center for Biotechnology Information (NCBI) https://www.nature.com/nature

    Anjanette Johnston & Ilene Karsch-Mizrachi

  5. Department of Chemistry and Biochemistry, University of Colorado https://www.nature.com/nature

    Sara Nakielny, Doug Wendel, Jerry Kennedy, Elizabeth Costello, Robert Larsen, Catherine Lozupone & Jesse Stombaugh

  6. Departments of Microbiology and Immunology and of Medicine, Stanford University School of Medicine https://www.nature.com/nature

    George Weinstock & Erica Sodergren

  7. Structural and Computational Biology Unit, European Molecular Biology Laboratory https://www.nature.com/nature

    Mani Arumugam & Peer Bork

  8. Department of Ecology and Evolutionary Biology, University of Colorado https://www.nature.com/nature

    Robert Guralnick, Noah Fierer & Teresa Legg

  9. J. Craig Venter Institute https://www.nature.com/nature

    Josh Neufeld

  10. Mathematics and Computer Science Division, Argonne National Laboratory https://www.nature.com/nature

    Andreas Wilke, Elizabeth Glass & Folker Meyer

  11. European Molecular Biology Laboratory (EMBL) Outstation, European Bioinformatics Institute (EBI) https://www.nature.com/nature

    Guy Cochrane, Robert Vaughan & Christopher Hunter

  12. Cooperative Institute for Research in Environmental Sciences, University of Colorado https://www.nature.com/nature

    Karen Nelson & Barbara Methé

  13. Department of Molecular, Cellular and Developmental Biology, University of Colorado https://www.nature.com/nature

    Laura Baumgartner, Norman Pace & Justin Kuczynski

  14. DOE Joint Genome Institute https://www.nature.com/nature

    Philip Hugenholtz & Nikos Kyrpides

  15. Microbial Genomics and Bioinformatics Group, Max Planck Institute for Marine Microbiology; Jacobs University Bremen gGmbH https://www.nature.com/nature

    Wolfgang Hankeln & Pier Luigi Buttigieg

  16. Lehrstuhl für Mikrobiologie, Technische Universität München https://www.nature.com/nature

    Diana Nemergut

  17. National Human Genome Research Institute, National Institutes of Health https://www.nature.com/nature

    Vivien Bonazzi & Jane Peterson

  18. Department of Molecular Virology and Microbiology, Baylor College of Medicine https://www.nature.com/nature

    Janet Jansson

  19. Human Genome Sequencing Center, Baylor College of Medicine; Center for Genome Sciences and Systems Biology, Washington University School of Medicine https://www.nature.com/nature

    Sarah Highlander & Joseph Petrosino

  20. Department of Environmental Sciences, University of Colorado https://www.nature.com/nature

    Giriprakash Palanisamy

  21. Max Planck Institute for Marine Microbiology, Bremen, Germany

    Frank Oliver Glöckner, Pelin Yilmaz & Renzo Kottmann

  22. Department of Medicine and the Department of Microbiology, New York University https://www.nature.com/nature

    Martin Blaser

  23. Department of Biology, University of Waterloo https://www.nature.com/nature

    Jörg Peplies

  24. Department of Computer Science, University of Colorado https://www.nature.com/nature

    Dan Knights & Antonio Gonzalez

  25. DOE Joint Genome Institute; Los Alamos National Laboratory, Bioscience Division https://www.nature.com/nature

    Patrick Chain

  26. Center for Genome Sciences and Systems Biology, Washington University School of Medicine https://www.nature.com/nature

    Omry Koren, Ruth Ley & Aymé Spor

  27. Environmental Sciences Division, Oak Ridge National Laboratory https://www.nature.com/nature

    Lita Proctor

  28. Ribocon GmbH https://www.nature.com/nature

    Jeroen Raes

  29. Department of Applied Mathematics and Computer Science, Ghent University https://www.nature.com/nature

    Peter Dawyndt

  30. VIB - Vrije Universiteit Brussel; Canadian Centre for DNA Barcoding, Biodiversity Institute of Ontario https://www.nature.com/nature

    David Relman

  31. The National Science Foundation https://www.nature.com/nature

    Sujeevan Ratnasingham

  32. Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory https://www.nature.com/nature

    Todd DeSantis

  33. European Molecular Biology Laboratory (EMBL) Outstation, European Bioinformatics Institute (EBI); Oxford e-Research Centre, University of Oxford https://www.nature.com/nature

    Susanna Assunta-Sansone & Eamonn Maguire

  34. Lawrence Berkeley National Laboratory, Earth Science Division https://www.nature.com/nature

    Christian Lauber & Donna Lyons

  35. National Ecological Observatory Network (NEON) https://www.nature.com/nature

    Rachel Gallery

  36. Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine https://www.nature.com/nature

    Richard Gibbs

  37. NERC Centre for Ecology and Hydrology, Oxford, UK

    Dawn Field

  38. Department of Biological Sciences, University of Southern California https://www.nature.com/nature

    Jed Fuhrman

  39. Department of Microbiology, Cornell University https://www.nature.com/nature

    Wolfgang Ludwig

  40. University of Colorado, Boulder, USA

    Rob Knight

  41. Ribosomal Database Project, Michigan State University https://www.nature.com/nature

    James Cole

  42. Department of Biology, University of New Mexico https://www.nature.com/nature

    Inigo San Gil

  43. School of Civil and Environmental Engineering, Yonsei University https://www.nature.com/nature

    Joonhong Park

  44. The Josephine Bay Paul Center for Comparative Molecular Biology and Evolution, Marine Biological Laboratory https://www.nature.com/nature

    Linda Amaral-Zettler

  45. Center for Microbial Ecology, Michigan State University https://www.nature.com/nature

    James Tiedje

  46. Plymouth Marine Laboratory; Mathematics and Computer Science Division, Argonne National Laboratory; Dept of Ecology and Evolution, University of Chicago https://www.nature.com/nature

    Jack Gilbert

  47. NERC Environmental Bioinformatics Centre, Oxford Centre for Ecology and Hydrology; Department of Computer Science, University of Manchester https://www.nature.com/nature

    Norman Morrison

  48. European Molecular Biology Laboratory (EMBL) Outstation, Europe; Oxford e-Research Centre, University of Oxford https://www.nature.com/nature

    Phillipe Rocca-Serra

Authors
  1. Peter Sterk
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  2. Jeffrey Gordon
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  3. Owen White
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  4. Anjanette Johnston
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  5. Sara Nakielny
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  6. George Weinstock
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  7. Mani Arumugam
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  8. Robert Guralnick
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  9. Josh Neufeld
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  10. Andreas Wilke
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  13. Doug Wendel
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  16. Wolfgang Hankeln
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  84. Doyle Ward
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Corresponding author

Correspondence to Frank Oliver Glöckner.

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Cite this article

Sterk, P., Gordon, J., White, O. et al. The “Minimum Information about an ENvironmental Sequence” (MIENS) specification. Nat Prec (2010). https://doi.org/10.1038/npre.2010.5252.2

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  • Received: 16 November 2010

  • Accepted: 16 November 2010

  • Published: 16 November 2010

  • DOI: https://doi.org/10.1038/npre.2010.5252.2

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Keywords

  • standards paper
  • marker genes
  • environmental parameters
  • sequence data
  • MIENS
  • Genomic Standards Consortium

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