Fig. 1: The geographic structure of Neotoma fuscipes across its range in California based on the 85% missing-data threshold ddRAD matrix.

Maximum likelihood tree, Admixture, and Structure results showing three distinct clusters (K = 3): one southern and two northern populations. Colors on the branch tips correspond to the Admixture/Structure population individuals were placed within, and the colored circles on map indicate the proportion of ancestry each individual has to a population. The black circles at nodes indicate bootstrap support >70%.