Table 2 Summary of the SMR/HEIDI analysis results.

From: Dual-trait genomic analysis in highly stratified Arabidopsis thaliana populations using genome-wide association summary statistics

Gene

Top SNP

MAF

140 accessions

648 accessions

   

PSMR

PHEIDI

PSMR

PHEIDI

AT1G11560

Chr1:3881093

0.34

6.8 × 10−3

4.8 × 10−1

3.2 × 10−2

2.6 × 10−1

AT1G11655

Chr1:3874970

0.39

4.1 × 10−2

9.7 × 10−2

5.9 × 10−1

NA

AT1G11690

Chr1:4299126

0.04

3.7 × 10−1

NA

9.4 × 10−1

NA

AT1G11590

Chr1:3716355

0.11

5.0 × 10−1

NA

2.2 × 10−2

1.5 × 10−1

AT1G11482

Chr1:3830013

0.63

8.2 × 10−1

NA

1.5 × 10−1

NA

  1. Top SNP The top SNP in expression QTL analysis, MAF Minor allele frequency of the top associated SNP, PSMR p-value from SMR, PHEIDI p-value from HEIDI test.
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