Fig. 2: Genomic similarity of the GEMS non-DEC fecal isolates to pathotype E. coli. | Nature Communications

Fig. 2: Genomic similarity of the GEMS non-DEC fecal isolates to pathotype E. coli.

From: Genomic diversity of non-diarrheagenic fecal Escherichia coli from children in sub-Saharan Africa and south Asia and their relatedness to diarrheagenic E. coli

Fig. 2

Heat maps of the pairwise SNP distances among genomes of phylogroup A (a) and phylogroups B1 and C (b). SNP distances were calculated for the SNPs analyzed in the phylogenomic analysis of Fig. 1. The row and column annotation of the heat maps indicates the pathotype association of each GEMS non-DEC or reference genome (see inset figure legend). The range of SNP distances and corresponding color scale is provided to the right of each heat map. The pairwise SNP distance matrix is available in Supplementary Data Set 3.

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