Table 1 Summary of A. belladonna and D. stramonium genome assembly and annotation
Sequencing | A. belladonna | D. stramonium |
|---|---|---|
 Raw bases from WGS-Illumina (Gb) | 53.88 | 145.27 |
 Raw bases from WGS-Nanopore (Gb) | 170.64 | / |
 Raw bases from WGS-PacBio (Gb) | / | 828.66 |
 HiFi (Gb) | / | 52.47 |
 Raw bases from Hi-C (Gb) | 244.16 | 320.93 |
Assembly | ||
 Number of contigs | 1753 | 1298 |
 Assembled genome size (bp) | 1,595,075,802 | 1,844,831,445 |
 Contig N50 (Mb) | 3.03 | 105.17 |
 Scaffold N50 (Mb) | 42.83 | 156.09 |
 Average Scaffold length (bp) | 1,468,823 | 1,503,559 |
 GC content (%) | 33.86 | 39.16 |
 Anchorage to chromosomes (%) | 99.50 | 97.42 |
 Complete BUSCOs (%) | 98.9 | 98.9 |
Annotation | ||
 Percentage of repeat sequences (%) | 64.72 | 82.98 |
 LTR rate (%) | 43.14 | 66.16 |
 Number of predicted genes | 70,209 | 32,037 |
 Average gene length (bp) | 4801.59 | 3913.23 |
 Average CDS length (bp) | 1155.96 | 1127.27 |
 Average exon length (bp) | 288.83 | 235.26 |
 Average intron length (bp) | 756.68 | 734.77 |
