Table 1 Data collection and refinement statistics
 | RNase J | RNase J-ssRNA |
---|---|---|
PDB code | 7WNT | 7WNU |
Data collection | ||
Space group | P6422 | C2221 |
Unit cell a,b,c (Ã…) | 128.52 128.52 184.276 | 92.06 145.38 192.1 |
α, β, γ [°] | 90 90 120 | 90 90 90 |
Resolution range (Å)a | 44.4–2.45 (2.53–2.45) | 41.51–3.20 (3.31–3.20) |
Total reflections | 67687 (6538) | 43318 (4314) |
Unique reflections | 33845 (3269) | 21660 (2157) |
Completeness (%) | 99.65 (98.58) | 99.80 (99.72) |
I/σ(I) | 22.93 (2.43) | 16.77 (5.24) |
Wilson B-factor | 58.61 | 59.25 |
R-mergeb | 0.016 (0.286) | 0.040 (0.156) |
R-meas | 0.022 (0.404) | 0.057 (0.221) |
R-pim | 0.016 (0.286) | 0.040 (0.156) |
CC1/2 | 1 (0.872) | 0.998 (0.973) |
Refinement statistics | ||
Resolution (Å) | 44.4–2.45 (2.53–2.45) | 41.51–3.20 (3.31–3.20) |
Reflections used in refinement | 33789 (3267) | 21630 (2151) |
Reflections used for R-free | 1628 (139) | 1067 (93) |
Rworkc | 0.219 (0.327) | 0.185 (0.255) |
Rfreed | 0.251 (0.369) | 0.240 (0.356) |
No. residues | 529 | 1111 |
RMSD | ||
Bond lengths (Ã…) | 0.009 | 0.011 |
Bond angles (Ã…) | 1.33 | 1.34 |
Average B-factor | 63.79 | 63.03 |
Ramachandran favored (%) | 96.18 | 89.57 |
Ramachandran allowed (%) | 3.82 | 10.43 |
Ramachandran outliers (%) | 0 | 0 |
No. atoms | ||
Protein or RNA | 3882 | 8536 |
Ligands or ions | 2 | 4 |
water | 86 | 0 |
B-factors | Â | Â |
Protein or RNA | 63.99 | 63.03 |
Ligands or ions | 60.73 | 66.61 |