Table 2 Median sequence recovery rates and nssr scores on EnzBench and BR_EnzBench

From: ProRefiner: an entropy-based refining strategy for inverse protein folding with global graph attention

 

EnzBench

BR_EnzBench

 

n = 51

n = 320

 

Recovery%

nssr%

Recovery%

nssr%

GVP-GNN

41.38[36.36, 42.86]

57.89[55.00, 63.16]

29.41[27.27, 31.58]

47.83[47.37, 52.17]

ProteinMPNN-C

52.00[50.00, 59.09]

70.00[65.00, 77.78]

40.91[40.00, 42.48]

60.00[59.09, 60.87]

ProRefiner

57.89[55.00, 63.64]

73.68[70.59, 78.26]

43.48[41.64, 44.44]

60.87[59.09, 63.64]

  1. Data in brackets reports the 95% confidence interval of the median, estimated from 10,000 bootstrap samples.
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