Fig. 1: Three types of OsINO80-occupied regions upon OsINO80 overexpression. | Nature Communications

Fig. 1: Three types of OsINO80-occupied regions upon OsINO80 overexpression.

From: The chromatin remodeling factor OsINO80 promotes H3K27me3 and H3K9me2 deposition and maintains TE silencing in rice

Fig. 1

a Heatmaps of the distributions of OsINO80, H2A.Z, H3, H3K4me2, H3K4me3, H3K9me2, H3K27me3, H3K36me3, and H2Aub within OsINO80-enriched peaks and 1-kb flanking regions as determined by the ChIP-seq analysis. T1, T2, and T3 OsINO80-occupied regions had H2A.Z-enriched, H3K9me2-enriched, and H2A.Z/H3K9me2-deficient peaks, respectively. Rows are sorted according to decrease in the OsINO80 signal within peaks. The ChIP-seq data for H2A.Z, H3, H3K4me2, H3K4me3, H3K9me2, H3K27me3, H3K36me3, and H2Aub in wild-type (WT) rice plants were generated in this study. b Mean coverage profiles for the C/G base frequency of the three types of putative OsINO80 targets (T1, red; T2, blue; T3, orange) and the 2-kb flanking regions; the same number of random fragments (gray) with the same widths served as the control. c Average distributions of methylated DNA in the CG, CHG, and CHH contexts in WT rice within the T1 (red), T2 (blue) and T3 peaks (orange) and within control peaks (gray) that were randomly selected from the genome on the basis of number and length. Source data underlying (a) are provided as a Source Data file.

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