Fig. 2: Host filtration pipeline and runtime evaluation. | Nature Communications

Fig. 2: Host filtration pipeline and runtime evaluation.

From: Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data

Fig. 2

a Pipeline of host filtration methods. b Using simulated data with a 50/50 mix of human data from HPRC and microbial data from FDA-ARGOS, we applied the 3 host filtration methods with 3 different sample sizes. Runtimes were averaged across 10 runs per sample size. HG38: GRCH38.p14, T2T: T2T-CHM13v2.0, HPRC: Human Pangenome Reference Consortium 2024 release.

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