Fig. 1: Performance evaluation of scMultiMap, SCENT and Signac using single-cell multimodal data on PBMC from 10x Genomics23,24,25,26. | Nature Communications

Fig. 1: Performance evaluation of scMultiMap, SCENT and Signac using single-cell multimodal data on PBMC from 10x Genomics23,24,25,26.

From: scMultiMap: Cell-type-specific mapping of enhancers and target genes from single-cell multimodal data

Fig. 1

a Empirical type I errors on null data with independent gene expression and peak accessibility levels for 1000 randomly selected peak-gene pairs. The dashed line marks the nominal level of 0.05. Boxplots display the median (center), the first to the third quartiles (box), and whiskers extending to values within 1.5 × the distance between the quartiles. Points indicate outliers beyond this range. b Precision-recall curves on simulated data, with the same color legend as in (a). c Computing time in hours (log scale) on a dataset with 729 cells and 31,132 candidate peak-gene pairs, evaluated on 1 core of an Intel(R) Xeon(R) Gold 6326 CPU @ 2.90GHz. Source data are provided as a Source Data file.

Back to article page