Extended Data Fig. 4: H3K9Ac and H3K4me3 levels of SAGA- and PAGA-bound genes. | Nature Plants

Extended Data Fig. 4: H3K9Ac and H3K4me3 levels of SAGA- and PAGA-bound genes.

From: Conserved and plant-specific histone acetyltransferase complexes cooperate to regulate gene transcription and plant development

Extended Data Fig. 4

a, Boxplots showing the H3K9Ac and H3K4me3 levels of total SAGA- and PAGA-bound genes and bound genes with reduced or increased/unchanged H3K9Ac level in the corresponding SAGA and PAGA mutants. Random: 5000 random genes. Sample size of each boxplot: GCN5-bound a (n = 10081), b (n = 4717), and c (n = 5364); ADA2B-bound a (n = 6033), b (n = 3035), and c (n = 2998); ADA2A-bound a (n = 6940), b (n = 2234), and c (n = 4706); and ING1-bound a (n = 12989), b (n = 3095), c (n = 9894). In boxplots, centre lines and box edges are medians and the interquartile range (IQR), respectively. Whiskers extend within 1.5 times the IQR. P values determined by two-tailed Mann Whitney U test are indicated above boxes. b, H3K9Ac and H3K4me3 levels of SAGA- and PAGA-bound genes and of the bound genes with affected levels of H3K9Ac in the corresponding mutants. Total Arabidopsis genes were divided into deciles based on the H3K9Ac and H3K4me3 levels and sorted in ascending order. In each decile, the number of total ADA2B-, GCN5-, ADA2A-, and ING1-bound genes and of the bound genes with increased, reduced, and unchanged levels of H3K9Ac in the corresponding mutants are shown.

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