Fig. 1: DH1 v.3 genome features and statistics. | Nature Plants

Fig. 1: DH1 v.3 genome features and statistics.

From: Population genomics identifies genetic signatures of carrot domestication and improvement and uncovers the origin of high-carotenoid orange carrots

Fig. 1

a, Circos display of the DH1 v.3 genomic features: (i) the chromosome (chr) coordinates in Mb; (ii) gene frequency (bin size, 100 kb) (red line) and alignments of v.2 contigs versus v.3 chromosomes (blue heat map); (iii) gaps (Ns) in the v.3 genome assembly; (iv) the telomeric repeat frequency histogram (×100) (red) and the centromeric repeat frequency histogram (blue); (v) heat map representing the distribution of gypsy+copia transposable elements (TEs) (bin size, 250 kb); (vi) heat map representing new v.3 genes (bin size, 250 kb); (vii) the distribution of new transcription factors; and (viii) the distribution of new resistance genes. b, Schematic representation of the genomic region spanning DcMYB6 in the DH1 v.2 and v.3 genome assemblies. DcMYB6 was not assembled at the chromosome level in DH1 v.2, probably due to complex repetitive sequences flanking the gene. The region including DcMYB6 was fully assembled in the DH1 v.3 assembly.

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