Table 3 IF: immunofluorescence quantification, IHC: immunohistochemistry, 3D: three-dimensional visualization, TEM: transmission electron microscopy

From: Ultrastructural localization of Porphyromonas gingivalis gingipains in the substantia nigra of Parkinson’s disease brains

Antibody/chemicals/detection

Source

Identifier

Dilution

CAB101 RgpB, Rabbit (0.5 mg/ml)

Cortexyme, Inc.

 

IHC; 1:1000

IF, 3D, TEM; 1:500

CAB102.1 Kgp, Rabbit (0.46 mg/ml)

Cortexyme, Inc.

 

IHC; 1:1000

IF, 3D, TEM; 1:500

Anti-Alpha-synuclein (phosphoS129) antibody [P-syn/81 A], Mouse monoclonal

Abcam

Cat# ab184674, RRID:AB_2819037

IF, 3D, TEM; 1:3,000

Anti-NeuN purified, Guinea Pig polyclonal

Millipore

Cat# ABN90P, RRID:AB_2341095

IF; 1:250

biotinylated Goat anti-Rabbit

Thermo Fisher Scientific

Cat# A-16100

IHC; 1:1000

biotinylated Donkey anti-Rabbit

Thermo Fisher Scientific

Cat# A-16027

IHC; 1:1000

Goat anti-Rabbit IgG (H + L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 488

Thermo Fisher Scientific

Cat# A-11034, RRID:AB_2576217

IF, 3D; 1:250

Goat anti-Mouse IgG (H + L) Highly Cross-Adsorbed Secondary Antibody, Alexa Fluor 594

Thermo Fisher Scientific

Cat# A-11032, RRID:AB_2534091

IF, 3D; 1:250

Goat Anti-Guinea Pig IgG (H + L) Highly Cross-adsorbed Antibody, Alexa Fluor 647 Conjugated

Molecular Probes

Cat# A-21450, RRID:AB_141882

IF, 3D; 1:250

Hoechst 33342, Trihydrochloride, Trihydrate

Invitrogen Molecular Probes

Cat# H1399

IF, 3D; 1:20,000

ExtrAvidin−Peroxidase buffered aqueous solution

Sigma-Aldrich

Cat#E2886-1ML

IHC; 1:1000

Goat anti-Rabbit IgG (H + L) coupled with 6 nm gold, EM grade

Electron Microscopy Science, Auron 106.011

Cat# 25103

TEM; 1:50

Goat anti-Mouse IgG (H + L) coupled with 15 nm gold, EM grade

Electron Microscopy Science, Auron 115.022

Cat# 25132

TEM; 1:50