Extended Data Fig. 8: Neighbourhood comparisons along differentiation trajectories.
From: An atlas of rabbit development as a model for single-cell comparative genomics
a–c) Neighbourhoods associated with a) allantois, b) amnion and c) blood differentiation trajectories are shown for the rabbit and mouse. Maximally correlated neighbourhood pairs are linked, with the strength of correlation indicated with line colour. Neighbourhoods are coloured by annotated cell type. Neighborhoods in b, c are represented in the UMAP embedding, whereas in a, neighborhoods are positioned according to a ForceAtlas2 graph layout. d) Alluvial plot showing the proportion of rabbit gut tube neighbourhoods which form maximally correlated mappings with mouse neighbourhoods of different cell types. Rabbit neighborhoods represented in all panels were constructed from cells integrated across all samples (N = 19 embryos). Details of the neighbourhood mappings are provided in the source data.
