Fig. 5: IPHs designed from the phased potato pangenome graph.
From: Leveraging a phased pangenome for haplotype design of hybrid potato
a, Chimeric map of the IPHs-A genome and the most ideal graph path of 12 chromosomes from heterotic A group (left). The numbers of dSVs and dSNPs for each chromosome are indicated. Haplotypes for chromosome 1 are shown in detail (right), and numbers of dSVs and dSNPs for each haplotype are represented by five parts derived from the ideal designed recombination events. The chimeric graph path of IPHs-A ‘ideal’ chromosome 1 is highlighted with red frames. Inversions and centromeres are coloured in genomic collinear blocks and chromosomes, respectively. b, Similar to a, the chimeric map of the IPHs-E genome and the ideal chimeric graph paths from the heterotic E group. c, The number of dSNPs of IPHs-A and IPHs-E, the overlap indicating the number of homozygous dSNPs in the inferred ideal F1 hybrid generated from IPHs-A and IPHs-E.
