Extended Data Fig. 2: Visualization of the potato chromosome 10 pangenome graph.
From: Leveraging a phased pangenome for haplotype design of hybrid potato
The visualization utilizes a 1D representation of the pangenome graph, with the DMv6.1 reference genome serving as the baseline for orientation. Graph nodes are arranged from left to right corresponding to their positions within the reference genome. The black lines under the paths are the links, which represent the graph topology. Black and red bars indicate regions oriented in the forward and reverse direction relative to the pangenome sequence (the complete sequence formed by concatenating all graph nodes). Access to visualizations of the 1D PGGB pangenome graphs for all chromosomes can be found in Figshare (https://figshare.com/articles/dataset/IPHs/25846003).
