Supplementary Figure 6: Cell type partitioning in the diffusion map of the thymic hematopoietic cells observed with single-cell RNA-seq.
From: Inferring population dynamics from single-cell RNA-sequencing time series data
DC: diffusion component. (a) Diffusion map on all thymic hematopoietic cells (n = 10895). Colour: branch allocation according to diffusion pseudotime. (b,c,d) Diffusion map on gated thymic hematopoietic cells: T-cells and non-conventional lymphocytes (n = 10872). (b) Branch allocation according to diffusion pseudotime. (c) Adapted diffusion pseudotime-based branch allocation for pseudodynamics based on a linear cut in the diffusion component 1 versus 2 plane. (d) Branching and non-branching region allocation for pseudodynamics: Cells are in the branching region if they have a diffusion pseudotime coordinate smaller than 0.25 and are not early thymic progenitors.
