Extended Data Fig. 1: An overview of the number of genes detected in each cell across all datasets.
From: A multicenter study benchmarking single-cell RNA sequencing technologies using reference samples
The violin plot shows the number of genes detected in each cell across 20 scRNA-seq datasets. The plot was generated using Seurat (version 3.1). Each dot represents a single cell. The violin shapes summarize the data distributions, which are colored in the background to signify each of the 20 different scRNA seq datasets. Each scRNA-seq dataset is plotted on the X-axis; the Y-axis shows the corresponding number of genes detected in a cell (nGene) for that dataset. The average number of genes detected in each cell was about 4000 and most of the cells had 2500–7500 genes, except for samples C1_LLU_A and C1_LLU_B. The 10x Genomics scRNA datasets were preprocessed using Cell Ranger version 3.1.
