Extended Data Fig. 5: Cell line expression of tumor-specific TE-chimeric transcripts.
From: Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements
a, Box plots with overlaid dot plots of the number of candidates expressed in each cancer cell line profiled across various tumor types. The ‘N=’ lists the number of cell lines in each boxplot. Box plot format: center line, median; box limits, upper and lower quartiles; whiskers, 1.5x interquartile range. b, Heatmap of CAGE-seq TPM expression of candidates across the 10 cancer cell lines we profiled. At the top is a dot plot showing how many TCGA tumor samples a candidate is present in.
