Extended Data Fig. 1: Expression of TE-chimeric transcripts across TCGA and GTEx.
From: Pan-cancer analysis identifies tumor-specific antigens derived from transposable elements
a, Frequency of 26,816 TE-chimeric transcripts in 33 cancer types from TCGA. Each dot represents a separate sample, and the top of the graph lists the number of samples in each cancer type and the mean number of TE-chimeric transcripts for that cancer type. b, Same as (a) but with TCGA normal tissue samples. c, Same as (a) but with GTEx adult tissue samples. d, For tumors with matched normal samples in TCGA, box plots of the number of TE-chimeric transcripts across all samples. There is a superimposed dot plot with a line connecting matched tumor and normal samples. The ‘N=’ lists the number of samples summarized with the box plots. All box plots follow the following format: center line, median; box limits, upper and lower quartiles; whiskers, 1.5x interquartile range.
