Fig. 5: 500,000-sample phylogeny inferred by MAPLE. | Nature Genetics

Fig. 5: 500,000-sample phylogeny inferred by MAPLE.

From: Maximum likelihood pandemic-scale phylogenetics

Fig. 5

Example phylogeny, with two consecutive zoom-ins each of about 100× magnification. Different SARS-CoV-2 lineages are shown in different colors, with some clades labeled to give context. Left—500,000-sample phylogeny estimated by MAPLE from real SARS-CoV-2 sequence data. Center—zoom-in on a subtree containing 3,600 B.1.177 samples. Right—further zoom-in on a subtree containing 49 samples. Phylogenies were plotted using Taxonium45.

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