Extended Data Fig. 6: Association between epigenetic variations and expression levels of lncRG1 and lncRG2.
From: Long noncoding RNAs underlie multiple domestication traits and leafhopper resistance in soybean
a, Differences of CpG, CHG and CHH DNA methylation between the G. max haplotype (n = 29) and the G. soja haplotype (n = 10) surrounding lncRG1 and lncRG2 (Supplementary Table 7). Each vertical bar represents the average methylation level difference within a 300 bp window between the two haplotypes with sliding step=50 bp. The purple color highlights the differences in the promoter regions of the two genes. The red asterisk indicates the window used for correlation analysis in (b) and (c). b-c, Correlations between the CpG methylation differences in the promoter regions of lncRG1 and lncRG2 with their expression levels as measured by Pearson’s correlation coefficient (n = 41). The P values are obtained by a two-sided Pearson’s correlation test. Dashed lines are the trend lines.
