Extended Data Fig. 1: Single cell transcriptome of C. roseus roots highlights differential regulation between organs.
From: Single-cell multi-omics in the medicinal plant Catharanthus roseus
a, UMAP (uniform manifold approximation and projection) for C. roseus roots (n = 2636 cells). b, MIA biosynthetic gene expression heatmap: Genes are arranged from upstream to downstream. Previously reported cell-type-specific expression in roots17 is marked with asterisks. c, Comparison of cell-type-specific expression pattern between leaf and root among tandemly duplicated paralogs. Each row is a paralog, organized by gene family. Columns are cell types, grouped by organ. Asterisks represent the paralog that is expressed along with the rest of the pathway. Color scales show the average scaled expression of each gene at each cell type (see also Methods). Dot sizes indicates the fraction of cells where a given gene is expressed at a given cell type. See Supplementary Table 6 for a list of gene abbreviations. Ground tissue includes cortex and endodermis cell types. M: meristem; RC: root cap; G: ground tissue; E: epidermis; St: stele; Un: unassigned.
