Extended Data Fig. 1: scRNAseq of Teff under normal conditions.
From: Gut CD4+ T cell phenotypes are a continuum molded by microbes, not by TH archetypes

a, Quality control plots (per-cell number of unique reads vs number of transcripts detected) for the scRNAseq data from total colonic CD4+ T cells (data from Fig. 1a). b, Same plots as (a), for CD4+ QC of scRNAseq data from total colonic CD4+ T cells of germ-free and SPF mice. c, SMART-SEQ2 single-cell data from colon T memory cells (from ref. 16). Aggregate expression of Th-specific genesets (defined as for Fig. 1) are overlayed on the tSNE.