Fig. 2: AMY1A MAP-graph in two different scales. | Nature Methods

Fig. 2: AMY1A MAP-graph in two different scales.

From: Multiscale analysis of pangenomes enables improved representation of genomic diversity for repetitive and clinically relevant genes

Fig. 2

a, The left panel shows a sparse MAP-graph representation of the AMY region with (w, k, r, min_span) = (48, 56, 12, 12). 503 vertices and 699 edges represent the 200–550 kb AMY region. The graph vertices are colored by the principal bundles that correspond to the principal bundle decomposition of selected genomes on the right panel (gray vertices are those that are not in the principal bundles). b, The left panel shows a denser MAP-graph with r = 4. The graph has 3,471 vertices and 2,684 edges, which is about 5 times as much as the MAP-graph in a. The principal bundle decomposition reveals a more detailed repeat structure than in a.

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