Extended Data Fig. 8: UMAPs of integrated latent space for the sci-ATAC-seq3 dataset.
From: Modeling fragment counts improves single-cell ATAC-seq analysis
UMAP of the integrated latent space of the sciATAC-seq3 dataset using the Poisson VAE, Binary VAE, PeakVI, Signac using LSI, cisTopic using LDA, and SCALE model. Cells are colored by cell type (top row) and batch (bottom row). For cisTopic and Signac, additional batch correction was performed using Harmony.
