Extended Data Fig. 6: UMAPs of integrated latent space for the Satpathy dataset. | Nature Methods

Extended Data Fig. 6: UMAPs of integrated latent space for the Satpathy dataset.

From: Modeling fragment counts improves single-cell ATAC-seq analysis

Extended Data Fig. 6

UMAP of the integrated latent space of the Satpathy dataset using the Poisson VAE, Binary VAE, PeakVI, Signac using LSI, cisTopic using LDA, and SCALE model. Cells are colored by cell type (top row) and batch (bottom row). For cisTopic and Signac, additional batch correction was performed using Harmony.

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