Extended Data Fig. 9: Identification of genuine OR expression with LiMCA full-length transcript information. | Nature Methods

Extended Data Fig. 9: Identification of genuine OR expression with LiMCA full-length transcript information.

From: Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice

Extended Data Fig. 9

Genome browser views of mRNA read coverage profiles for different OR genes in example single cells. Read bars in the top panel indicates heterozygous SNP sites of each cross. mRNA coverage, junctions, and reads are shown below. Gene annotations are taken from GENCODE. Coverage is set to logarithmic scale. The first two columns show genuine OR expression and the last two columns show false OR expression. Red shades highlight the incomplete read covrages. The identified OR-expressing alleles are represented by ♀ (maternal) or ♂ (paternal), respectively.

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