Fig. 2: GABAergic cell types of the mouse amygdala.
From: Neuronal types in the mouse amygdala and their transcriptional response to fear conditioning
a, Dendrogram of GABAergic cell types, with cell-type number and two-gene identifier. Differentially expressed genes defining branching points across the dendrogram (gray), and the specific branches (yellow–green) are highlighted on the left. Likely ___location, indicated on top of dendrogram (based on AMBA spatial correlation). b, Examples of inferred spatial distributions of seven distinct cell types, visualized in a single relevant section with high correlation to AMBA. c, Weighted spatial correlation of GABA types to six coronal sections Visium ST. Each dot represents one capture spot, colored by the dominant cell type (see a, right). d, Genes enriched to single or groups of clusters, visualized as single-cell violin plots. Each dot represents one cell; black square represents the median cluster expression and the number of molecules (y scale maximum) is on the right. e, GABA cell types 1–20 distributions visualized as correlation heatmap to Visium ST (indicated in c). Gray, low and red, high. c, capsular; l, lateral; m, medial; ad, anterodorsal; pd, posterodorsal; int, interneurons.
