Table 7 PPI extraction evaluation results on five PPI corpora.

From: BioWordVec, improving biomedical word embeddings with subword information and MeSH

Data Set

Mikolov et al.1

Pyysalo et al.21

Chiu et al.8

BioWordVec (win5) w/o MeSH

BioWordVec (win5) w/MeSH

F-Score

σ

F-Score

σ

F-Score

σ

F-Score

σ

F-Score

σ

AIMed

0.445

0.076

0.457

0.087

0.492

0.064

0.484

0.101

0.487

0.081

BioInfer

0.524

0.038

0.532

0.044

0.545

0.053

0.543

0.041

0.549

0.039

IEPA

0.603

0.062

0.597

0.062

0.615

0.061

0.617

0.049

0.623

0.064

HPRD50

0.484

0.187

0.499

0.121

0.481

0.145

0.504

0.136

0.511

0.13

LLL

0.679

0.12

0.688

0.093

0.684

0.124

0.708

0.092

0.713

0.095

  1. The highest value is shown in bold. “σ” denotes the standard deviation of the F-score. “win5” denotes the BioWordVec was trained by setting the context window size as 5.
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