Table 4 Comparative analysis diagram of different articles’ genomes.
From: Genomics and transcriptomics of the Chinese mitten crabs (Eriocheir sinensis)
Item | OE assembly | Cui et al., 2021 | Tang et al., 2020 | Jun Wang et al., 2022 |
|---|---|---|---|---|
Contig | 18,472 | 1,70,724 | 6,666 | 4,808 |
Contig | 1,59,228 | 26,045 | 27,47,658 | 7,17,335 |
Longest Contig(bp) | 30,61,231 | 14,57,336 | 1,50,47,233 | 45,379, 147 |
Scaffold No. | 6,908 | 1,01,205 | 4,311 | 2, 160 |
Scaffold N50 (bp) | 17,444, 176 | 17, 127,685 | 1,76,08,299 | 1,69,75,517 |
Longest Scaffold(bp) | 4,16,92,756 | 5,08,64,308 | 3,14,80,327 | 45,379, 147 |
BUSCO(%) | 96 | 86 | 86 | 95 |
Gene No. | 30, 188 | 28,033 | 22,619 | 20,286 |
Protein No. | 30,661 | 28,033 | 22,619 | 20,286 |
Repeat (%) | 50 | 45 | 61 | 60 |
Chromoso me No. | 71 | 73 | 72 | 70 |
Total length(bp) | 1,26,60,92,319 | 1,56,76,15,418 | 1,272, 135, 1 | 17,67,84,644 |
Sequencing Data | Illumina(PE150,262 G) PacBio Sequel II(113 G) Hi-C(288 G) | Illumina(PE + MP,374 G) PacBio Sequel II(51 G) Hi-C(132 G) 10xGenomics(PE150,154 G) | Illumina(96 G from Song et al., 2016) Oxford Nanopore(53 G) | Illumina(81.2 G) Oxford Nanopore(81.7 G) BioNano(442.0 G) Hi-C(300.5 G) |
