Table 6 Crab repeat sequence statistics.
From: Genomics and transcriptomics of the Chinese mitten crabs (Eriocheir sinensis)
Class | Count | bpMasked | %masked |
|---|---|---|---|
DNA | — | — | — |
DTA | 235503 | 62691279 | 4.95% |
DTC | 293645 | 46129784 | 3.64% |
DTH | 45599 | 7559054 | 0.60% |
DTM | 331286 | 63515079 | 5.02% |
DTT | 92040 | 13557745 | 0. 17% |
Helitron | 299447 | 43008315 | 3.40% |
LTR | — | — | — |
Copia | 256 | 77925 | 0.01% |
Gypsy | 167634 | 55434958 | 4.38% |
unknown | 352825 | 135781543 | 10.72% |
MITE | — | — | — |
DTA | 38055 | 4960868 | 0.39% |
DTC | 10370 | 1097092 | 0.09% |
DTH | 12186 | 1234624 | 0. 10% |
DTM | 27617 | 4031807 | 0.32% |
DTT | 415 | 34301 | 0.00% |
total interspersed | 1906878 | 439114374 | 34.68% |
Low_complexity | 255669 | 30522569 | 2.41% |
Simple_repeat | 1776544 | 161175759 | 12.73% |
Total | 3939091 | 630812702 | 49.83% |
