Table 2 Genes annotated in the chloroplast genome.
From: Pan-chloroplast genomes for accession-specific marker development in Hibiscus syriacus
Gene category | Gene function | Gene names |
|---|---|---|
Photosynthesis-related genes | Photosystem I | psaA; psaB; psaC; psaI; psaJ |
Photosystem II | psbA; psbB; psbC; psbD; psbE; psbF; psbH; psbI; psbJ; psbK; psbL; psbM; psbT; psbZ | |
Cytochrome b/f complex | petA; petB; petD; petG; petL; petN | |
ATP synthase | atpA; atpB; atpE; atpF; atpH; atpI | |
NADH dehydrogenase | ndhA; ndhB*; ndhC; ndhD; ndhE; ndhF; ndhG; ndhH; ndhI; ndhJ; ndhK | |
RubisCO large subunit | rbcL | |
Photosystem assembly/stability Factors | pafI; pafII; pbf1 | |
Self-replication-related genes | RNA polymerase | rpoA; rpoB; rpoC1*; rpoC2 |
Ribosomal proteins (small subunit) | rps2; rps3; rps4; rps7*; rps8; rps11; rps12*; rps14; rps15; rps16; rps18; rps19 | |
Ribosomal proteins (large subunit) | rpl2*; rpl14; rpl16; rpl20; rpl22; rpl23*; rpl32; rpl33; rpl36 | |
tRNAs | trnA-UGC*; trnC-GCA; trnD-GUC; trnE-UUC; trnF-GAA; trnfM-CAU; trnG-GCC; trnG-UCC*; trnH-GUG; trnI-CAU*; trnI-GAU*; trnK-UUU; trnL-CAA*; trnL-UAA; trnL-UAG; trnM-CAU; trnN-GUU*; trnP-UGG; trnQ-UUG; trnR-ACG*; trnR-UCU; trnS-GCU; trnS-GGA; trnS-UGA; trnT-GGU; trnT-UGU; trnV-GAC*; trnV-UAC; trnW-CCA; trnY-GUA | |
rRNAs | rrn5*; rrn4.5*; rrn16*; rrn23* | |
Other genes | Maturase | matK |
Envelope membrane protein | cemA | |
Subunit of acetyl-CoA | accD | |
C-type cytochrome synthesis gene | ccsA | |
Protease | clpP1 | |
Translational initiation factor | infA | |
Unknown | Conserved hypothetical chloroplast reading frames | ycf1, ycf2* |
