Table 3 The repetitive sequences identified in the genome of E. macrophylla.
From: Haplotype-resolved chromosome-level genome assembly of Ehretia macrophylla
Order | Superfamily | Number | Length (bp) | Percent (%) |
|---|---|---|---|---|
Haplotype a | ||||
LTR | Â | 851,702 | 790,852,679 | 43.48 |
| Â | Copia | 135,351 | 109,800,558 | 6.04 |
| Â | Gypsy | 285,814 | 351,659,875 | 19.33 |
|  | Retrovirus | 314 | 86,793 | — |
| Â | unknown | 430,223 | 329,305,453 | 18.10 |
LINE | Â | 5,195 | 3,078,252 | 0.17 |
TIR | Â | 1,199,599 | 534,061,496 | 29.36 |
| Â | EnSpm_CACTA | 117,091 | 50,176,752 | 2.76 |
| Â | MuDR_Mutator | 291,572 | 91,979,798 | 5.06 |
| Â | PIF_Harbinger | 19,645 | 6,162,896 | 0.34 |
| Â | Tc1_Mariner | 7,691 | 1,968,931 | 0.11 |
| Â | hAT | 763,600 | 383,773,119 | 21.10 |
Helitron | Â | 63,169 | 16,361,313 | 0.90 |
| Â | Helitron | 63,169 | 16,361,313 | 0.90 |
Other TEs | Â | 631,626 | 95,801,905 | 5 |
Total TEs | Â | 2,751,291 | 1,440,155,645 | 79.18 |
Haplotype b | ||||
LTR | Â | 788,470 | 713,166,126 | 45.13 |
| Â | Copia | 136,732 | 109,438,952 | 6.93 |
| Â | Gypsy | 259,567 | 314,706,790 | 19.92 |
| Â | Retrovirus | 335 | 99,704 | 0.01 |
| Â | unknown | 391,836 | 288,920,680 | 18.28 |
LINE | Â | 5,175 | 2,974,698 | 0.19 |
TIR | Â | 841,681 | 384,318,183 | 24.32 |
| Â | EnSpm_CACTA | 108,323 | 46,824,686 | 2.96 |
| Â | MuDR_Mutator | 249,750 | 79,863,483 | 5.05 |
| Â | PIF_Harbinger | 19,800 | 6,193,662 | 0.39 |
| Â | Tc1_Mariner | 7,631 | 1,978,503 | 0.13 |
| Â | hAT | 456,177 | 249,457,849 | 15.79 |
Helitron | Â | 63,141 | 16,196,919 | 1.03 |
| Â | Helitron | 63,141 | 16,196,919 | 1.03 |
Other TEs | Â | 560,342 | 88,821,425 | 6 |
Total TEs | Â | 2,258,809 | 1,205,477,351 | 76.29 |
