Table 4 Statistics of repetitive sequences in the T. bombifrons genome.
Types | Number of elements | Length | Percentage occupied of sequence |
|---|---|---|---|
SINEs | 0 | 0 bp | 0.00% |
ALUs | 0 | 0 bp | 0.00% |
MIRs | 0 | 0 bp | 0.00% |
LINEs | 40763 | 20939947 bp | 3.19% |
LINE1 | 80 | 38293 bp | 0.01% |
LINE2 | 32403 | 14044271 bp | 2.14% |
L3/CR1 | 349 | 151062 bp | 0.02% |
LTR elements | 68297 | 36625328 bp | 5.58% |
ERVL | 0 | 0 bp | 0.00% |
ERVL-MaLRs | 0 | 0 bp | 0.00% |
ERV_classI | 1284 | 870386 bp | 0.13% |
ERV_classII | 0 | 0 bp | 0.00% |
DNA elements | 42683 | 17227146 bp | 2.63% |
hAT-Charlie | 8585 | 1306322 bp | 0.20% |
TcMar-Tigger | 0 | 0 bp | 0.00% |
Unclassified | 687759 | 142724487 bp | 21.75% |
Total interspersed repeats | 217516908 bp | 33.15% | |
Small RNA | 0 | 0 bp | 0.00% |
Satellites | 0 | 0 bp | 0.00% |
Simple repeats | 142044 | 10548685 bp | 1.61% |
Low complexity | 18015 | 1102503 bp | 0.17% |
