Figure 2 | Scientific Reports

Figure 2

From: Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the Xanthomonadaceae

Figure 2

Phylogenetic and structural analysis of secreted lipase. (a) Highlighted in red are γ-proteobacteria (all phytopathogens) whereas blue highlights β-proteobacteria, all associated with soil or plant roots. The numbers associated with nodes represent bootstrap values at the color gradient. The numbers surrounding the phylogeny represent models proposed in “b” taken from the structure of the reference protein (R) obtained from X. oryzae using Protein Data Bank (PDB – c3h2Ia)93. (b) Structural profile of LipA orthologs from X. oryzae (R) highlighting the canonical residues directly involved in substrate catalysis (S176, D336 and H377). The putative protein structures (1 to 11) were obtained using Phyre282. The alignment confidence degree varied from good (red) to bad (blue) in each structure, with the lowest conservation in the region associated with ligand-binding ___domain (LBD). Check for details at Fig. S9 – Supporting Information.

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