Table 4 Evidence for genetic differentiation among geographic populations of C. neoformans in China.

From: Multilocus Sequence Typing Reveals both Shared and Unique Genotypes of Cryptococcus neoformans in Jiangxi Province, China

 

BJ (112)

JX (86)

GD (31)

SH (22)

SC (19)

HN (15)

HK (14)

HEB (13)

ZJ (11)

JS (8)

SD (8)

HUB (7)

LN (7)

AH (6)

SX (5)

Beijing (BJ)

 

0.001

0.001

0.001

0.001

0.001

0.001

0.001

0.001

0.001

0.001

0.001

0.001

0.001

0.002

Jiangxi (JX)

0.426

 

0.379

0.225

0.012

0.334

0.118

0.176

0.259

0.336

0.355

0.344

0.331

0.324

0.295

Guangdong (GD)

0.382

0.000

 

0.422

0.059

0.359

0.101

0.429

0.310

0.243

0.313

0.266

0.251

0.212

0.182

Shanghai (SH)

0.289

0.009

0.000

 

0.273

0.390

0.383

0.304

0.327

0.354

0.310

0.346

0.363

0.313

0.263

Sichuan (SC)

0.195

0.093

0.081

0.000

 

0.360

0.347

0.196

0.270

0.292

0.127

0.369

0.139

0.450

0.516

Henan (HN)

0.337

0.000

0.000

0.000

0.021

 

0.222

0.525

0.161

0.332

0.363

0.294

0.305

0.270

0.249

Hongkong (HK)

0.323

0.031

0.041

0.005

0.026

0.000

 

0.503

0.489

0.507

0.284

0.377

0.407

0.139

0.063

Hebei (HEB)

0.369

0.019

0.002

0.008

0.069

0.000

0.007

 

0.466

0.397

0.399

0.321

0.333

0.312

0.282

Zhejiang (ZJ)

0.379

0.000

0.000

0.007

0.085

0.000

0.015

0.000

 

0.421

0.711

0.487

0.636

0.573

0.313

Jiangsu (JS)

0.380

0.000

0.000

0.000

0.080

0.000

0.009

0.000

0.000

 

1.000

0.485

0.478

0.440

0.001

Shandong (SD)

0.381

0.000

0.000

0.011

0.083

0.000

0.019

0.000

0.006

0.000

 

0.720

0.738

0.692

0.406

Hubei (HUB)

0.356

0.000

0.000

0.000

0.043

0.000

0.000

0.000

0.000

0.020

0.001

 

1.000

0.740

0.422

Liaoning (LN)

0.377

0.000

0.000

0.006

0.074

0.000

0.000

0.000

0.013

0.020

0.001

0.000

 

0.728

0.423

Anhui (AH)

0.313

0.000

0.000

0.000

0.000

0.000

0.000

0.000

0.026

0.051

0.007

0.002

0.002

 

0.473

Shanxi (SX)

0.358

0.000

0.000

0.000

0.027

0.000

0.000

0.000

0.000

0.000

0.000

0.000

0.000

0.000

 
  1. The pairwise population F ST values are shown below diagonal. The probability of the observed F ST values being statistically significant is shown above diagonal, with a P value of <0.05 rejecting the null hypothesis that the two compared populations are genetically similar to each other.
  2. The abbreviations on the top row are the same as those in the left column. Numbers in parenthesis of the top row are the numbers of isolates from each of the geographic populations.