Table 1 Illumina RNA-Seq output statistics of poplar stems infected with canker pathogens.
From: Fungal canker pathogens trigger carbon starvation by inhibiting carbon metabolism in poplar stems
ID | Raw Reads Number | Clean Reads Number | Clean Reads Rate (%) | Clean Bases Number | Total Reads | Mapped Reads | Mapping Rate | MultiMap Reads | MultiMap Rate (%) |
|---|---|---|---|---|---|---|---|---|---|
Vso_Ph_1 | 48,423,943 | 47,416,356 | 97.92 | 11,932,758,024 | 85,225,692 | 49,835,656 | 58% | 2,692,108 | 0.03 |
Vso_Ph_2 | 50,367,634 | 49,364,704 | 98.01 | 12,423,211,270 | 88,107,330 | 52,281,364 | 59% | 2,811,085 | 0.03 |
Bdo_Ph_1 | 58,760,201 | 58,626,888 | 99.77 | 14,759,035,740 | 89,272,184 | 48,525,403 | 54% | 2,697,157 | 0.03 |
Bdo_Ph_2 | 51,400,883 | 49,046,657 | 95.42 | 12,342,161,406 | 82,748,230 | 44,622,382 | 54% | 2,546,407 | 0.03 |
Ctrl_Ph_1 | 79,530,164 | 79,275,154 | 99.68 | 19,959,391,628 | 87,512,254 | 51,855,440 | 59% | 3,004,736 | 0.03 |
Ctrl_Ph_2 | 67,574,052 | 67,415,778 | 99.77 | 16,965,704,828 | 85,082,502 | 48,299,231 | 57% | 3,006,199 | 0.04 |
Vso_Xy_1 | 66,189,963 | 66,030,811 | 99.76 | 16,617,621,932 | 82,442,750 | 35,589,872 | 43% | 1,732,008 | 0.02 |
Vso_Xy_2 | 44,267,940 | 43,537,925 | 98.35 | 10,958,415,320 | 78,253,422 | 35,412,647 | 45% | 1,873,055 | 0.02 |
Bdo_Xy_1 | 61,763,767 | 61,545,144 | 99.65 | 15,487,160,550 | 89,642,948 | 40,213,639 | 45% | 2,208,309 | 0.02 |
Bdo_Xy_2 | 62,464,972 | 62,210,959 | 99.59 | 15,646,188,196 | 83,910,706 | 37,663,575 | 45% | 1,830,723 | 0.02 |
Ctrl_Xy_1 | 52,998,345 | 52,869,016 | 99.76 | 13,307,448,344 | 89,219,344 | 42,150,946 | 47% | 2,296,483 | 0.03 |
Ctrl_Xy_2 | 39,265,510 | 38,610,488 | 98.33 | 9,715,310,208 | 70,023,048 | 37,230,574 | 53% | 1,731,286 | 0.02 |
Average | 56,917,281 | 56,329,157 | 98.83 | 14,176,200,621 | 84,286,700 | 43,640,061 | 52% | 2,369,130 | 0.03 |
