Table 1 Assembly and annotation metrics of the eggplant genome and its comparison with other high-quality Solanaceae genomes and the previous eggplant draft.
From: A chromosome-anchored eggplant genome sequence reveals key events in Solanaceae evolution
| Â | Eggplant (this work) | Eggplant Kazusa | Potato (ITAG1.0) | Tomato (ITAG2.4) | Pepper (PGA v1.55) |
|---|---|---|---|---|---|
Projected size (Gb) | 1.21 | 1.13 | 0.84 | 0.90 | 3.30 |
Number of scaffolds | 10,383 | 33,873 | 66,254 | 3,223 | 37,989 |
Ungapped length of scaffolds (Gb) | 1.06 (88%) | 0.78 (69%) | 0.58 (69%) | 0.74 (82%) | 2.96 (90%) |
Ungapped length of anchored Scaffolds (Gb) | 0.89 (73%) | — | 0.58 (69%) | 0.72 (80%) | 2.67 (81%) |
N50 of anchored scaffolds (Mb) | 2.9 | 0.065 | 1.3 | 16.5 | 2.4 |
Protein coding genes | 34,916 | 85,446 | 35,004 | 34,725 | 34,899 |
Of which organellar (unique) | 2,058 | — | 1,734 | 1,706 | 2,594 |
BUSCO genes present in the annotation | 1,332 (96.9%) | 1,028 (74.8%) | 1,334 (97.0%) | 1,370 (99.6%) | 1,124 (81.8%) |
Anchored genes | 28,435 | — | 35,004 | 33,838 | 30,242 |
Total length of repeats (Mb) | 772 (73%) | — | 499 (59%) | 426 (47%) | 1.98 (60%) |
