Table 2 The sequence analysis of HBGA binding sites and predicted conformational epitopes of GII.14 VP1 protein.
From: Increasing Recombinant Strains Emerged in Norovirus Outbreaks in Jiangsu, China: 2015–2018
GII.14 strains | HBGA Binding Sites | Predicted Conformational Epitopes | ||||
|---|---|---|---|---|---|---|
Site I (aa347) | Site II (aa374) | Site III (aa439) | aa309 | aa365 | aa457 | |
JN699038 CHN/1978 | TRAH | SNDF | AGGH | LDGSPIDPTDDVPAPLGTP | IGQVRFKSSSNDFDLHDPTKFTP | EHFYQESAPSQS |
AY130761 USA/1999 | TRAH | SDDF | AGGH | LDGSPIDPTDDMPAPLGTP | IGQVRFKSSSDDFDLHDPTKFTP | EHFYQEAAPSQS |
EF547404 JPN/2001 | TRAH | SGDF | AGGH | LDGSPIDPTDDMPAPLGTP | IGQVRFKSSSGDFDLHDPTKFTP | EHFYQEAAPSQS |
EF670650 CHN/2006 | TRAH | SNDF | AGGH | LDGSPIDPTDDMPAPLGTP | IGQVRFKSSSNDFDLHDPTKFTP | EHFYQEAAPSQS |
GQ856465 CHN/2007 | TRAH | SNDF | AGGH | LDGSPIDPTDDMPAPLGTP | IGQVRFKSSSNDFDLHDPTKFTP | EHFYQEAAPSQS |
GU017901 JPN/2008 | TRAH | SNDF | AGGH | LDGSPIDPTDDMPAPLGTP | IGQVRFKSSSNDFDLHDPTKFTP | EHFYQEAAPSQS |
LC133340 JPN/2013 | TRAH | SNDF | AGGH | LDGSPIDPTDDMPAPLGTP | IGQVRFKSSSNDFDLHDPTKFTP | EHFYQEAAPSQS |
JSOB/CZ0907/2017 | TRAH | SNDF | AGGH | LDGSPIDPTDDMPAPLGTP | IGQVRFKSSSNDFDLHDPTKFTP | EHFYQEAAPSQS |
