Table 1 Fusion transcripts identified in 59 brain samples. The asterisk (*) represents events retaining exon boundaries from both of its partner genes.
Gene left | Gene right | Chr left | Cord left | Chr right | Cord right | Recurrence | Dinucleotide preference | Left exon intact | Right exon intact |
|---|---|---|---|---|---|---|---|---|---|
KANSL1* | ARL17A* | chr17 | 44171925 | chr17 | 44430295 | 10 | GT-AG | yes | yes |
KANSL1* | ARL17A* | chr17 | 44171925 | chr17 | 44648234 | 9 | GT-AG | yes | yes |
ENSG00000212127* | PRH1-PRR4* | chr12 | 11126253 | chr12 | 11001005 | 5 | GT-AG | yes | yes |
ENSG00000227733* | HYDIN* | chr1 | 146126403 | chr16 | 71196632 | 4 | GT-AG | yes | yes |
FAM78B | ENSG00000229588 | chr1 | 166135290 | chr1 | 166304564 | 4 | GT-AG | no | yes |
FLJ39739 | NBPF9 | chr1 | 147917467 | chr1 | 144676872 | 3 | CC-TA | no | no |
CCDC7* | C10orf68* | chr10 | 32854485 | chr10 | 32873231 | 3 | CT-AC | yes | yes |
ABLIM1 | ENSG00000228484 | chr10 | 116361719 | chr10 | 116527819 | 3 | CT-AC | yes | no |
LOC100129961* | ENSG00000224043* | chr2 | 135635089 | chr2 | 135493150 | 3 | GT-AG | yes | yes |
ENSG00000225065* | NCOA6* | chr20 | 33302393 | chr20 | 33303168 | 3 | GT-AG | yes | yes |
ENSG00000243795 | C3orf17 | chr3 | 112862700 | chr3 | 112738552 | 3 | CT-AC | no | yes |
ENSG00000236537* | TULP4* | chr6 | 158733082 | chr6 | 158735299 | 3 | CT-AC | yes | yes |
LOC729852 | ENSG00000233108 | chr7 | 7841373 | chr7 | 8007329 | 3 | GT-AG | yes | no |
ENSG00000218328 | KAZN | chr1 | 14507086 | chr1 | 14925478 | 2 | GT-AG | yes | no |
PDE4DIP | FLJ39739 | chr1 | 145013720 | chr1 | 147931723 | 2 | CT-AC | no | yes |
CCDC7* | C10orf68* | chr10 | 32832227 | chr10 | 32873231 | 2 | CT-AC | yes | yes |
HSPA12A | ENO4 | chr10 | 118466795 | chr10 | 118609076 | 2 | CT-AC | yes | no |
ENSG00000231121* | NAV3* | chr12 | 77966045 | chr12 | 78334098 | 2 | GT-AG | yes | yes |
ENSG00000230021 | PCBD2 | chr1 | 564469 | chr5 | 134261453 | 1 | AC-TG | no | no |
ENSG00000198744 | DHFR | chr1 | 570067 | chr5 | 79946838 | 1 | GC-CA | no | no |
MTOR | UBIAD1 | chr1 | 11316632 | chr1 | 11334116 | 1 | CT-AC | no | yes |
ENSG00000231485* | JAK1* | chr1 | 65532310 | chr1 | 65352023 | 1 | GT-AG | yes | yes |
PFKFB3* | LOC399715* | chr10 | 6268327 | chr10 | 6368508 | 1 | GT-AG | yes | yes |
ENSG00000249456 | ZRANB1 | chr10 | 126628942 | chr10 | 126631875 | 1 | CT-AC | no | yes |
ALG1L9P | FAM66C | chr11 | 71518527 | chr12 | 8346798 | 1 | GT-AG | no | yes |
OPCML* | NTM* | chr11 | 132812820 | chr11 | 132081915 | 1 | GT-AG | yes | yes |
ENSG00000245482 | ALG10B | chr12 | 34185072 | chr12 | 38720271 | 1 | CT-AA | no | no |
ACAD10 | MAPKAPK5 | chr12 | 112182444 | chr12 | 112308981 | 1 | AA-CT | yes | yes |
PSMC1 | ENSG00000205533 | chr14 | 90738533 | chr14 | 90739625 | 1 | AG-CC | no | no |
ENSG00000186031* | FMN1* | chr15 | 33445248 | chr15 | 33300275 | 1 | GT-AG | yes | yes |
LRRK1 | CHSY1 | chr15 | 101590983 | chr15 | 101775286 | 1 | CT-AC | no | yes |
THRB | THRB-AS1 | chr3 | 24378861 | chr3 | 24536623 | 1 | CT-AC | yes | no |
ENSG00000249598 | SDHAP1 | chr3 | 195685882 | chr3 | 195686956 | 1 | GT-AG | no | yes |
ENSG00000250859 | HNRNPK | chr5 | 126847434 | chr9 | 86585718 | 1 | AT-AG | no | yes |
ENSG00000236537* | TULP4* | chr6 | 158703294 | chr6 | 158735299 | 1 | CT-AC | yes | yes |
CPQ | TSPYL5 | chr8 | 97919555 | chr8 | 98287867 | 1 | CT-AC | no | no |
CLIC2 | ENSG00000224216 | chrX | 154563678 | chrX | 154564556 | 1 | TA-GG | yes | yes |
TTTY14 | NCRNA00185 | chrY | 21239153 | chrY | 21039090 | 1 | GT-AG | no | no |
