Table 2 Major allele frequency and polymorphism information content (PIC) of 36 SNPs used in population structure and genetic diversity analysis of 179 rice cultivars.

From: Allelic sequence variation in the Sub1A, Sub1B and Sub1C genes among diverse rice cultivars and its association with submergence tolerance

Marker Id.

Major Allele Frequency

PIC

01-3916-1_C_156

0.7095

0.3399

01-608-4_C_375

0.5978

0.4309

01-6351-1_C_202

0.8324

0.2484

02-267

0.6313

0.4164

02-3029-1_C_474

0.7207

0.3597

02-4333-1_C_293

0.7430

0.3259

03-1691-1_C_373

0.7039

0.3364

03-3478-1_C_206

0.6592

0.3686

03-4660-1_C_355

0.6369

0.3628

04-1801-20_C_428

0.9609

0.0723

04-19-4_C_240

0.9609

0.0745

04-3787-3_C_358

0.6927

0.4168

05-2692-1_C_109

0.8994

0.1645

05-4192-1_C_280

0.6592

0.3686

05-48-1_C_279

0.5363

0.4320

06-1256-1_C_147

0.9497

0.0909

06-1776-1_C_501

0.7989

0.3014

06-2509-1_C_497

0.8492

0.2508

07-2904-39_C_299

0.9218

0.1414

07-293-12_C_368

0.8547

0.2175

07-4304

0.4804

0.4425

08-2765-2_C_360

0.9441

0.1039

08-4218-5_C_129

0.5363

0.4187

08-847-6_C_113

0.4916

0.4216

09-209

0.8603

0.2244

09-2107-5_C_145

0.6983

0.3729

09-2716-4_C_457

0.8939

0.1773

10-1192-7_C_178

0.5531

0.4436

10-188-1

0.6927

0.4265

10-2723

0.9274

0.1324

11-1849

0.8771

0.1924

11-3935

0.9330

0.1207

11-522-1_C_214

0.6872

0.3683

12-1794

0.9665

0.0636

12-3200-2_C_389

0.8715

0.2055

12–400

0.8715

0.2023

Mean

0.7668

0.2788

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