Figure 3 | Scientific Reports

Figure 3

From: Optical mapping of the 22q11.2DS region reveals complex repeat structures and preferred locations for non-allelic homologous recombination (NAHR)

Figure 3

Unique LCR22A structures across parental genomes. LCR22A haplotypes were grouped based on the two defined segmental duplication features (see Fig. 1) and DLE-1 label patterns. The left-most integers of each haplotype contig map (blue) indicate maps grouped by DLE-1 labels (61 groups) and the right-most integers indicate maps grouped by the two segmental duplication features (32 groups). The 160 kbp modules (red arrows) and SD22-3 modules (mustard arrows) were present, absent, or copy number variable in any orientation relative to the hg38 reference map. The partial 160 kbp modules (smaller red arrows) were only present in single copies and in reference orientation.

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