Table 6 The primers of the 17 SNPs used for the extension step of MassARRAY.

From: Screening of single nucleotide polymorphisms within HLA region related to hematopoietic stem cell transplantation using MassARRAY technology

SNP_ID

UEP_SEQ

EXT1_SEQ

EXT2_SEQ

EXT3_SEQ

rs5009448

CCTTAGGTGGCCTGT

CCTTAGGTGGCCTGTA

CCTTAGGTGGCCTGTG

 

rs2523958

CCTCACGGTGCTGTCC

CCTCACGGTGCTGTCCC

CCTCACGGTGCTGTCCT

 

rs2518028

CGTAGGAAGTGGGAAC

CGTAGGAAGTGGGAACC

CGTAGGAAGTGGGAACT

 

rs435766

GGGTCAGCAGAGCTCGG

GGGTCAGCAGAGCTCGGC

GGGTCAGCAGAGCTCGGT

 

rs213210

GCTTTAGCCTTCTAGTCC

GCTTTAGCCTTCTAGTCCC

GCTTTAGCCTTCTAGTCCT

 

rs107822

cTTTCCGCGTGGTGTCTC

cTTTCCGCGTGGTGTCTCC

cTTTCCGCGTGGTGTCTCT

 

rs17220087

gggCTCTGGAACGGCTGT

gggCTCTGGAACGGCTGTA

gggCTCTGGAACGGCTGTG

gggCTCTGGAACGGCTGTT

rs1536215

CTTGGTTTTCTGGTATGTC

CTTGGTTTTCTGGTATGTCC

CTTGGTTTTCTGGTATGTCG

 

rs2070120

ctCCAGAACATTGACCTCAT

ctCCAGAACATTGACCTCATA

ctCCAGAACATTGACCTCATG

 

rs79327197

ggcgGGTAAAACCTGCTCCA

ggcgGGTAAAACCTGCTCCAA

ggcgGGTAAAACCTGCTCCAG

 

rs111394117

gggaTCTCCTAGGGGTCTTG

gggaTCTCCTAGGGGTCTTGA

gggaTCTCCTAGGGGTCTTGG

 

rs3130048

cACACACATTGCAACAAAACA

cACACACATTGCAACAAAACAA

cACACACATTGCAACAAAACAG

 

rs9276982

cCCCGCATGATTTCCTAGCTCC

cCCCGCATGATTTCCTAGCTCCC

cCCCGCATGATTTCCTAGCTCCT

 

rs4713466

TCCCAAGTCAAAGGATTTTTAT

TCCCAAGTCAAAGGATTTTTATC

TCCCAAGTCAAAGGATTTTTATT

 

rs986522

gtcaATTCTGCTTTGTCAGTAAC

gtcaATTCTGCTTTGTCAGTAACC

gtcaATTCTGCTTTGTCAGTAACG

 

rs2009658

cCCTCAAATATTATTACTGCTACT

cCCTCAAATATTATTACTGCTACTC

cCCTCAAATATTATTACTGCTACTG

 

rs139791445

GACTTGGTGATTTTTTTTTTTTCT

GACTTGGTGATTTTTTTTTTTTCTC

GACTTGGTGATTTTTTTTTTTTCTG

 
  1. UEP_SEQ: unextended primer sequence; EXT1_SEQ: extension primer sequence 1; EXT2_SEQ: extension primer sequence 2; EXT3_SEQ: extension primer sequence 3.