Table 1 Cluster bean genome assembly, gene annotation and non-protein coding genes.
Cluster bean genome assembly features | Â |
|---|---|
Total length of the assembly (bp) | 550,317,005 |
GC content (%) | 32.64 |
Number of scaffolds | 58 |
Scaffold N50 (bp) | 78,271,499 |
Longest scaffold (bp) | 93,956,920 |
Number of contigs | 1580 |
Max contig length (bp) | 35,034,496 |
Min contig length (bp) | 970 |
Contig N50 (bp) | 7,127,297 |
Gene models | |
Number of gene models | 34,680 |
Mean transcript length (bp) | 3823.77 |
Mean coding sequence length (bp) | 289.115 |
Mean number of exons per gene | 5.35043 |
Mean exon length (bp) | 249.843 |
Mean intron length (bp) | 681.044 |
Number of genes annotated | 28,955 |
Number of genes unannotated | 5725 |
Non-protein coding genes | |
Number of rRNA fragments | 922 |
Mean length of rRNA fragments (bp) | 709.4143167 |
Percentage of rRNA fragments in genome | 0.118855132 |
Number of tRNA genes | 474 |
Mean length of tRNA genes (bp) | 70.58 |
Percentage of tRNA genes in genome | 0.006454462 |
Number of snRNA genes | 347 |
Mean length of snRNA genes (bp) | 100.39 |
Percentage of snRNA genes in genome | 0.006330533 |
Total number of repeat elements | 582,339 |
Total repetitive DNA length (bp) | 231,879,649 |
Percentage of repetitive DNA in genome | 42.13565034 |
