Table 2 Comparison of concentration data between literature and model (mmol/L) at different time points of the simulation.

From: Integrating glycolysis, citric acid cycle, pentose phosphate pathway, and fatty acid beta-oxidation into a single computational model

Metabolite

Conc. (literature)

\([\)mmol/L\(]\)

Model conc.

at starting point

Model conc.

during

glycolysis

Model conc.

during

\(\beta\)-oxidation

Model conc.

at the end

of simulation

SD over mean

Acetyl-CoA

0.072

0.070

0.071

0.060

0.060

0.002

Oxaloacetate

0.002–0.00632

0.006

0.005

0.001

0.001

0.126

Citrate

0.11433

0.190

0.184

0.115

0.110

0.031

Isocitrate cis-aconitate

0.002–0.00635

0.020

0.017

0.010

0.009

0.091

\(\alpha\)-ketoglutarate

0.004–0.01337

0.030

0.031

0.023

0.022

0.085

Succinyl-CoA succinate

0.36–0.9138

0.730

0.720

0.691

0.690

0.011

Fumarate

0.48529

0.485

0.488

0.490

0.490

0.012

Malate

0.49536

0.495

0.495

0.489

0.488

0.010

  1. Comparison of concentration data between literature and model (mmol/L) at different time points of the simulation (20th second during glycolysis and 9000th second during beta-oxidation).
  2. SD standard deviation.