Fig. 6 | Scientific Reports

Fig. 6

From: In-Silico discovery of 17alpha-hydroxywithanolide-D as potential neuroprotective allosteric modulator of NMDA receptor targeting Alzheimer’s disease

Fig. 6

Analysis of Secondary Structural Elements (SSE) of NMDA-17alpha-hydroxywithanolide D compound complex. Protein secondary structure elements (SSE) like alpha-helices (orange colored) and beta-strands (blue colored) are monitored throughout the simulation. As delineated in the plot above, the X-axis corresponds to the amino acid residues index, spanning the entire protein structure. On the other hand, the y-axis represents the calculated SSE percentage concerning the simulated timescale. The distinctive coloring of alpha-helices and beta-strands aids in visually discerning their respective contributions to the overall secondary structure.

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